PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G041700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 291aa    MW: 32662 Da    PI: 7.001
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G041700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.8e-23127227198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f k+lt sd+++ g l++ k++aee+     +++++  ++l+ +d++g+ W++++i+r++++r++lt+GW++Fv++++L  gD++vF +d
  Manes.04G041700.2.p 127 FSKKLTASDTSTYGGLSVLKRHAEEClppldMSSEPVMRELIAKDLHGNDWRFQHIFRGQPKRHLLTSGWSGFVSSKRLVPGDTFVFLRD 216
                          88****************************9666666779************************************************65 PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          +  ++   v+v+r
  Manes.04G041700.2.p 217 D--NGGIGVGVRR 227
                          4..4445677776 PP

2Auxin_resp27.41.5e-102612885683
           Auxin_resp  56 errlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          + r++Gt++ ++d+dp+rW++SkWr+L+
  Manes.04G041700.2.p 261 RPRFTGTIMRIEDIDPLRWRESKWRCLE 288
                          5689**********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-33124230IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-19125217No hitNo description
SuperFamilySSF1019361.07E-28125238IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-19127229IPR003340B3 DNA binding domain
PfamPF023626.1E-20127227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561127229IPR003340B3 DNA binding domain
PfamPF065071.1E-6261287IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEVHHNGHAA SSTAVRDTET ALYTALWHAC AGPFVTVPRA GELVFYFPQG HIEQVEASEN  60
QAVGQQRPIY NIPWKILCRV INVQLKVDPG TDEVFAQVTL FPQSNQDENT VEYEPPPPPP  120
RFHVRSFSKK LTASDTSTYG GLSVLKRHAE ECLPPLDMSS EPVMRELIAK DLHGNDWRFQ  180
HIFRGQPKRH LLTSGWSGFV SSKRLVPGDT FVFLRDDNGG IGVGVRRGMI EQSNDPIHLN  240
GVATAWEAIS SGSTLFTVHH RPRFTGTIMR IEDIDPLRWR ESKWRCLEMG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-992128918333Auxin response factor 1
4ldy_B2e-992128918333Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090598.11e-134PREDICTED: auxin response factor 2-like
RefseqXP_012439048.11e-131PREDICTED: auxin response factor 2-like isoform X1
SwissprotQ94JM31e-124ARFB_ARATH; Auxin response factor 2
TrEMBLA0A067JSN21e-134A0A067JSN2_JATCU; Auxin response factor
TrEMBLA0A0D2PYS71e-131A0A0D2PYS7_G
STRINGSolyc03g118290.2.11e-127(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-113auxin response factor 2